Collection Manifest¶
Each section below lists the datasets in a collection and shows where each dataset's curated files were last materialized.
A collection version may include datasets that were last materialized in different CRN Cloud releases. If a dataset was unchanged in the latest release, its metadata, file metadata, and curated outputs may still resolve to an earlier release path. Curation status below is as of release v5.1.0.
Curation status:
added — Curation files first produced in this release
updated — Curation files re-run or changed since the prior release
unchanged — Included but files resolve to an earlier release
not curated — No curated outputs for this dataset in this release
Invitro bulk RNAseq
invitro-bulk-rnaseq
unchanged 3
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
cohort-invitro-bulk-rnaseq | v1.0.0 | unchanged | v5.0.0 | v1.0.0 | v2.0.0 | 10.5281/zenodo.20400939 ↗ | → details |
jakobsson-invitro-bulk-rnaseq-dopaminergic | v1.0 | unchanged | v5.0.0 | v1.0.0 | v2.0.0 | 10.5281/zenodo.17149266 ↗ | → details |
jakobsson-invitro-bulk-rnaseq-microglia | v1.0 | unchanged | v5.0.0 | v1.0.0 | v2.0.0 | 10.5281/zenodo.17149290 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.0.0 current | v5.0.0 | v4.4 | 10.5281/zenodo.20400468 ↗ | 1 |
Mouse bulk RNAseq
mouse-bulk-rnaseq
added 2
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
lee-mouse-bulk-rnaseq-striatum-g2019s-hf-diet | v1.0 | added | v5.1.0 | v1.0.0 | v3.0.0 | 10.5281/zenodo.18273802 ↗ | → details |
lee-mouse-liver-bulk-rnaseq-g2019s | v1.0 | added | v5.1.0 | v1.0.0 | v3.0.0 | 10.5281/zenodo.18273810 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.0.0 current | v5.1.0 | v4.5 | 10.5281/zenodo.22758102 ↗ | 2 |
Mouse scRNAseq
mouse-sc-rnaseq
added 2 updated 1 unchanged 2
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
alessi-mouse-sn-rnaseq-dorsal-striatum-g2019s | v1.0 | added | v5.1.0 | v1.1.0 | v4.1.0 | 10.5281/zenodo.17212215 ↗ | → details |
biederer-mouse-sc-rnaseq | v1.0 | unchanged | v5.0.0 | v1.0.1 | v4.0.0 | 10.5281/zenodo.15485103 ↗ | → details |
cohort-mouse-sc-rnaseq | v1.0.0 | unchanged | v4.0.0 | v1.0.0 | v4.0.0 | 10.5281/zenodo.17860975 ↗ | → details |
cragg-mouse-sn-rnaseq-striatum | v2.0 | updated | v5.1.0 | v1.1.0 | v4.1.0 | 10.5281/zenodo.15400039 ↗ | → details |
schlossmacher-mouse-sn-rnaseq-osn-aav-transd | v1.0 | added | v5.1.0 | v1.1.0 | v4.1.0 | 10.5281/zenodo.17358327 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.1.0 current | v5.1.0 | v4.5 | 10.5281/zenodo.22757930 ↗ | 5 |
| v1.0.1 | v5.0.0 | v4.4 | 10.5281/zenodo.20403854 ↗ | 3 |
| v1.0.0 | v4.0.0 | v3.3 | 10.5281/zenodo.17860975 ↗ | 3 |
Mouse Spatial RNAseq
mouse-spatial-rnaseq
unchanged 1
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
cragg-mouse-spatial-visium-striatum | v1.0 | unchanged | v3.0.0 | v1.0.0 | v1.0.0 | 10.5281/zenodo.15428115 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.0.1 current | v5.0.0 | v4.3 | 10.5281/zenodo.20403845 ↗ | 1 |
| v1.0.0 | v4.0.0 | v3.3 | 10.5281/zenodo.16979297 ↗ | 1 |
PMDBS bulkRNAseq
pmdbs-bulk-rnaseq
unchanged 5
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
cohort-pmdbs-bulk-rnaseq | v1.2.1 | unchanged | v4.0.0 | v1.2.0 | v1.1.1 | 10.5281/zenodo.16975686 ↗ | → details |
hardy-pmdbs-bulk-rnaseq | v1.1 | unchanged | v4.0.0 | v1.2.0 | v1.1.1 | 10.5281/zenodo.16749098 ↗ | → details |
jakobsson-pmdbs-bulk-rnaseq | v1.0 | unchanged | v4.0.0 | v1.2.0 | v1.1.1 | 10.5281/zenodo.16929448 ↗ | → details |
lee-pmdbs-bulk-rnaseq-mfg | v1.1 | unchanged | v4.0.0 | v1.2.0 | v1.1.1 | 10.5281/zenodo.16748937 ↗ | → details |
wood-pmdbs-bulk-rnaseq | v1.1 | unchanged | v4.0.0 | v1.2.0 | v1.1.1 | 10.5281/zenodo.16749007 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.2.2 current | v5.0.0 | v4.4 | 10.5281/zenodo.20403867 ↗ | 5 |
| v1.2.1 | v4.1.0 | v4.3 | 10.5281/zenodo.19876662 ↗ | 5 |
| v1.2.0 | v4.0.0 | v3.3 | 10.5281/zenodo.17860841 ↗ | 5 |
| v1.1.0 | v3.0.0 | v3.2 | 10.5281/zenodo.16975686 ↗ | 4 |
| v1.0.0 | v2.0.0 | v3.0 | 10.5281/zenodo.14373344 ↗ | 4 |
PMDBS scATACseq
pmdbs-sc-atacseq
unchanged 1
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
voet-pmdbs-sn-atacseq-10x | v1.0 | unchanged | v5.0.0 | v1.0.0 | v2.0.0 | 10.5281/zenodo.18988729 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.0.0 current | v5.0.0 | v4.4 | 10.5281/zenodo.20400468 ↗ | 1 |
PMDBS scRNAseq
pmdbs-sc-rnaseq
unchanged 7
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
cohort-pmdbs-sc-rnaseq | v3.1.1 | unchanged | v4.0.0 | v3.1.0 | v3.1.0 | 10.5281/zenodo.19876217 ↗ | → details |
hafler-pmdbs-sn-rnaseq-pfc | v1.1 | unchanged | v3.0.0 | v3.0.0 | v3.0.0 | 10.5281/zenodo.15490150 ↗ | → details |
hardy-pmdbs-sn-rnaseq | v1.1 | unchanged | v3.0.0 | v3.0.0 | v3.0.0 | 10.5281/zenodo.16749080 ↗ | → details |
jakobsson-pmdbs-sn-rnaseq | v2.1 | unchanged | v3.0.0 | v3.0.0 | v3.0.0 | 10.5281/zenodo.15162834 ↗ | → details |
lee-pmdbs-sn-rnaseq | v1.1 | unchanged | v3.0.0 | v3.0.0 | v3.0.0 | 10.5281/zenodo.16744323 ↗ | → details |
scherzer-pmdbs-sn-rnaseq-mtg | v1.2 | unchanged | v4.0.0 | v3.1.0 | v3.1.0 | 10.5281/zenodo.16751625 ↗ | → details |
sulzer-pmdbs-sn-rnaseq | v1.1 | unchanged | v4.0.0 | v3.1.0 | v3.1.0 | 10.5281/zenodo.17612853 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v3.1.2 current | v5.0.0 | v4.4 | 10.5281/zenodo.20403941 ↗ | 7 |
| v3.1.1 | v4.1.0 | v3.3 | 10.5281/zenodo.19876217 ↗ | 7 |
| v3.1.0 | v4.0.0 | v3.3 | 10.5281/zenodo.17860778 ↗ | 7 |
| v3.0.0 | v3.0.0 | v3.2 | 10.5281/zenodo.16979638 ↗ | 6 |
| v2.0.0 | v2.0.0 | v3.0 | 10.5281/zenodo.14373048 ↗ | 6 |
| v1.0.0 | v1.0.0 | v2.1 | — | 5 |
PMDBS Spatial RNAseq
pmdbs-spatial-rnaseq
unchanged 2
| Dataset | Dataset version | Curation status | Curated in | Collection version when curated | Workflow version | Dataset DOI | Details |
|---|---|---|---|---|---|---|---|
edwards-pmdbs-spatial-geomx-th | v1.0 | unchanged | v3.0.0 | v1.0.0 | v1.0.0 | 10.5281/zenodo.15480990 ↗ | → details |
scherzer-pmdbs-spatial-visium-mtg | v1.1 | unchanged | v5.0.0 | v1.1.2 | v1.0.1 | 10.5281/zenodo.17242087 ↗ | → details |
Version history
| Collection version | Published with release | CDE version | Version DOI | Datasets |
|---|---|---|---|---|
| v1.1.2 current | v5.0.0 | v4.4 | 10.5281/zenodo.20403929 ↗ | 2 |
| v1.1.1 | v4.1.0 | v4.3 | 10.5281/zenodo.19876627 ↗ | 2 |
| v1.1.0 | v4.0.0 | v3.3 | 10.5281/zenodo.17860901 ↗ | 2 |
| v1.0.0 | v3.0.0 | v3.2 | 10.5281/zenodo.16979475 ↗ | 1 |
Uncollected datasets
These datasets are not assigned to any collection and have no curated outputs. Their files are in each dataset's own bucket.